Outpatient Submit with Specimen

Collect

Specimen Type Type of Container Volume of Specimen Status
Whole blood 4 mL Purple tube (EDTA) 4 mL - 8 mL Preferred
Whole blood Microtainer Purple tube (EDTA) 2 mL - 4 mL Alternate

Container Image

Outpatient Specimen Preparation

Whole blood: Do not centrifuge
                      Do not freeze
                      Transport to laboratory as soon as possible

Unacceptable Conditions

Wrong collection tube, Delayed or improper handling, Clotted specimen, Frozen specimen, Centrifuged specimen

Stability

Whole blood: Room temperature 24 hour(s)
Whole blood: Refrigerated 72 hour(s)

Remarks

If you are an external healthcare provider with no access to Nationwide Children’s Epic system, submission of a completed Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children’s Epic system, no requisition form is required; please place the lab order electronically in Epic. Specify in the lab order if this is for “Carrier” or “Diagnostic” testing. For questions, please call (614) 722-5321.

Clinical Information

This test detects the copy number of exon 7 of the SMN1 gene, and will report both homozygous and heterozygous deletions to identify carriers of Spinal Muscular Atrophy (SMA) as well as affected individuals. This test will also report SMN2 copy number. Diagnostic samples are performed as a STAT test, with expected result turnaround time of 7 days or less. If sending a diagnostic sample to arrive Friday or Saturday, please call the molecular genetics laboratory at 614-722-5321 to inform.

Autosomal recessive spinal muscular atrophy (SMA) is associated with having zero functional copies of SMN1. SMN1 exon 7 is absent in ~96% of patients with SMA, whereas most unaffected individuals have two or more functional SMN1 copies. Additionally, ~3–4% of patients with SMA are compound heterozygotes, with an SMN1 exon 7 deletion on one chromosome and a sequence variant in SMN1 on the other chromosome resulting in zero functional copies. Please note, this analysis does not detect other variants in SMN1 including sequence variants, rearrangements, or other deletions and duplications not involving exon 7.

SMN2 copy number has relevance in the setting of individuals with zero functional copies of SMN1 and can act as a disease modifier. Most patients with SMA type I have two or less copies of SMN2, three SMN2 copies are common in patients with SMA type II, and patients with SMA type III presentations often have 3 or 4 copies of SMN2SMN2 copy number analysis must be interpreted with caution as other modifiers of disease severity have been reported. 

When two copies of SMN1 exon 7 are detected for SMA carrier testing, the presence of the SMN1 c.3+80T>G and/or c.*211_212del gene duplication variants are assessed. This test cannot definitively differentiate between individuals with two copies of SMN1 on one chromosome and zero copies on the other chromosome (silent carrier) from individuals having one copy on each chromosome (non-carrier). The presence of a SMN1 c.*3+80T>G and/or c.*211_212del gene duplication variant is associated with an increased risk of being a silent carrier, but the absence of the gene duplication variant does not preclude the possibility of being a silent carrier. For individuals undergoing carrier testing, a population specific post-test carrier risk estimates table is provided for those who carry two or more SMN1 exon 7 copies.

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

10 days

Lab Area

Institute for Genomic Medicine

Methodology

Polymerase chain reaction (PCR)

CPT Codes

81329

Synonyms

  • IGM Test, Spinal Muscular Atrophy, SMN1, SMN2, SMA Carrier, SMA Diagnostic, Spinal Muscular Atrophy Carrier, Spinal Muscular Atrophy Diagnostic, Spinal Muscular Atrophy Copy Number Analysis, SMN1 Copy Number, SMN2 Copy Number, Survival of Motor Neuron 1, Survival of Motor Neuron 2, SMN, SMA Dosage, Exon 7 Copy Number, spinal, muscular, atrophy, SMA

Collect

Specimen Type Type of Container Volume of Specimen Status
Whole blood 4 mL Purple tube (EDTA) 4 mL - 8 mL Preferred
Whole blood Microtainer Purple tube (EDTA) 2 mL - 4 mL Alternate

Minimum Volume

Specimen Type Type of Container Minimum Volume
Whole blood 4 mL Purple tube (EDTA) 3 mL
Whole blood Microtainer Purple tube (EDTA) 1 mL

Container Image

Inpatient Specimen Preparation

Whole blood: Do not centrifuge
                      Do not freeze
                      Transport to laboratory as soon as possible

Unacceptable Conditions

Wrong collection tube, Delayed or improper handling, Clotted specimen, Frozen specimen, Centrifuged specimen

Stability

Whole blood: Room temperature 24 hour(s)
Whole blood: Refrigerated 72 hour(s)

Remarks

If you are an external healthcare provider with no access to Nationwide Children’s Epic system, submission of a completed Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children’s Epic system, no requisition form is required; please place the lab order electronically in Epic. Specify in the lab order if this is for “Carrier” or “Diagnostic” testing. For questions, please call (614) 722-5321.

Clinical Information

This test detects the copy number of exon 7 of the SMN1 gene, and will report both homozygous and heterozygous deletions to identify carriers of Spinal Muscular Atrophy (SMA) as well as affected individuals. This test will also report SMN2 copy number. Diagnostic samples are performed as a STAT test, with expected result turnaround time of 7 days or less. If sending a diagnostic sample to arrive Friday or Saturday, please call the molecular genetics laboratory at 614-722-5321 to inform.

Autosomal recessive spinal muscular atrophy (SMA) is associated with having zero functional copies of SMN1. SMN1 exon 7 is absent in ~96% of patients with SMA, whereas most unaffected individuals have two or more functional SMN1 copies. Additionally, ~3–4% of patients with SMA are compound heterozygotes, with an SMN1 exon 7 deletion on one chromosome and a sequence variant in SMN1 on the other chromosome resulting in zero functional copies. Please note, this analysis does not detect other variants in SMN1 including sequence variants, rearrangements, or other deletions and duplications not involving exon 7.

SMN2 copy number has relevance in the setting of individuals with zero functional copies of SMN1 and can act as a disease modifier. Most patients with SMA type I have two or less copies of SMN2, three SMN2 copies are common in patients with SMA type II, and patients with SMA type III presentations often have 3 or 4 copies of SMN2SMN2 copy number analysis must be interpreted with caution as other modifiers of disease severity have been reported. 

When two copies of SMN1 exon 7 are detected for SMA carrier testing, the presence of the SMN1 c.3+80T>G and/or c.*211_212del gene duplication variants are assessed. This test cannot definitively differentiate between individuals with two copies of SMN1 on one chromosome and zero copies on the other chromosome (silent carrier) from individuals having one copy on each chromosome (non-carrier). The presence of a SMN1 c.*3+80T>G and/or c.*211_212del gene duplication variant is associated with an increased risk of being a silent carrier, but the absence of the gene duplication variant does not preclude the possibility of being a silent carrier. For individuals undergoing carrier testing, a population specific post-test carrier risk estimates table is provided for those who carry two or more SMN1 exon 7 copies.

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

10 days

CPT Codes

81329

Lab Area

Institute for Genomic Medicine

Synonyms

  • IGM Test, Spinal Muscular Atrophy, SMN1, SMN2, SMA Carrier, SMA Diagnostic, Spinal Muscular Atrophy Carrier, Spinal Muscular Atrophy Diagnostic, Spinal Muscular Atrophy Copy Number Analysis, SMN1 Copy Number, SMN2 Copy Number, Survival of Motor Neuron 1, Survival of Motor Neuron 2, SMN, SMA Dosage, Exon 7 Copy Number, spinal, muscular, atrophy, SMA

Estimated Patient Price

< $1,000

Synonyms

  • IGM Test, Spinal Muscular Atrophy, SMN1, SMN2, SMA Carrier, SMA Diagnostic, Spinal Muscular Atrophy Carrier, Spinal Muscular Atrophy Diagnostic, Spinal Muscular Atrophy Copy Number Analysis, SMN1 Copy Number, SMN2 Copy Number, Survival of Motor Neuron 1, Survival of Motor Neuron 2, SMN, SMA Dosage, Exon 7 Copy Number, spinal, muscular, atrophy, SMA

CPT Codes

81329

Clinical Information

This test detects the copy number of exon 7 of the SMN1 gene, and will report both homozygous and heterozygous deletions to identify carriers of Spinal Muscular Atrophy (SMA) as well as affected individuals. This test will also report SMN2 copy number. Diagnostic samples are performed as a STAT test, with expected result turnaround time of 7 days or less. If sending a diagnostic sample to arrive Friday or Saturday, please call the molecular genetics laboratory at 614-722-5321 to inform.

Autosomal recessive spinal muscular atrophy (SMA) is associated with having zero functional copies of SMN1. SMN1 exon 7 is absent in ~96% of patients with SMA, whereas most unaffected individuals have two or more functional SMN1 copies. Additionally, ~3–4% of patients with SMA are compound heterozygotes, with an SMN1 exon 7 deletion on one chromosome and a sequence variant in SMN1 on the other chromosome resulting in zero functional copies. Please note, this analysis does not detect other variants in SMN1 including sequence variants, rearrangements, or other deletions and duplications not involving exon 7.

SMN2 copy number has relevance in the setting of individuals with zero functional copies of SMN1 and can act as a disease modifier. Most patients with SMA type I have two or less copies of SMN2, three SMN2 copies are common in patients with SMA type II, and patients with SMA type III presentations often have 3 or 4 copies of SMN2SMN2 copy number analysis must be interpreted with caution as other modifiers of disease severity have been reported. 

When two copies of SMN1 exon 7 are detected for SMA carrier testing, the presence of the SMN1 c.3+80T>G and/or c.*211_212del gene duplication variants are assessed. This test cannot definitively differentiate between individuals with two copies of SMN1 on one chromosome and zero copies on the other chromosome (silent carrier) from individuals having one copy on each chromosome (non-carrier). The presence of a SMN1 c.*3+80T>G and/or c.*211_212del gene duplication variant is associated with an increased risk of being a silent carrier, but the absence of the gene duplication variant does not preclude the possibility of being a silent carrier. For individuals undergoing carrier testing, a population specific post-test carrier risk estimates table is provided for those who carry two or more SMN1 exon 7 copies.

Methodology

Polymerase chain reaction (PCR)

Outpatient Submit with Specimen

Collect

Specimen Type Type of Container Volume of Specimen Status
Whole blood 4 mL Purple tube (EDTA) 4 mL - 8 mL Preferred
Whole blood Microtainer Purple tube (EDTA) 2 mL - 4 mL Alternate

Minimum Volume

Specimen Type Type of Container Minimum Volume
Whole blood 4 mL Purple tube (EDTA) 3 mL
Whole blood Microtainer Purple tube (EDTA) 1 mL

Container Image

Inpatient Specimen Preparation

Whole blood: Do not centrifuge
                      Do not freeze
                      Transport to laboratory as soon as possible

Outpatient Specimen Preparation

Whole blood: Do not centrifuge
                      Do not freeze
                      Transport to laboratory as soon as possible

InLab Processing

Send to Molecular Genetics Lab with all submitted paperwork. CPA needs to order GENSP in Sunquest for Non-EPIC lab order. Frozen or centrifuged specimen may be accepted at Molecular Genetics Lab's discretion.

Stability

Whole blood: Room temperature 24 hour(s)
Whole blood: Refrigerated 72 hour(s)

Unacceptable Conditions

Wrong collection tube, Delayed or improper handling, Clotted specimen, Frozen specimen, Centrifuged specimen

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

10 days

Remarks

If you are an external healthcare provider with no access to Nationwide Children’s Epic system, submission of a completed Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children’s Epic system, no requisition form is required; please place the lab order electronically in Epic. Specify in the lab order if this is for “Carrier” or “Diagnostic” testing. For questions, please call (614) 722-5321.

Clinical Information

This test detects the copy number of exon 7 of the SMN1 gene, and will report both homozygous and heterozygous deletions to identify carriers of Spinal Muscular Atrophy (SMA) as well as affected individuals. This test will also report SMN2 copy number. Diagnostic samples are performed as a STAT test, with expected result turnaround time of 7 days or less. If sending a diagnostic sample to arrive Friday or Saturday, please call the molecular genetics laboratory at 614-722-5321 to inform.

Autosomal recessive spinal muscular atrophy (SMA) is associated with having zero functional copies of SMN1. SMN1 exon 7 is absent in ~96% of patients with SMA, whereas most unaffected individuals have two or more functional SMN1 copies. Additionally, ~3–4% of patients with SMA are compound heterozygotes, with an SMN1 exon 7 deletion on one chromosome and a sequence variant in SMN1 on the other chromosome resulting in zero functional copies. Please note, this analysis does not detect other variants in SMN1 including sequence variants, rearrangements, or other deletions and duplications not involving exon 7.

SMN2 copy number has relevance in the setting of individuals with zero functional copies of SMN1 and can act as a disease modifier. Most patients with SMA type I have two or less copies of SMN2, three SMN2 copies are common in patients with SMA type II, and patients with SMA type III presentations often have 3 or 4 copies of SMN2SMN2 copy number analysis must be interpreted with caution as other modifiers of disease severity have been reported. 

When two copies of SMN1 exon 7 are detected for SMA carrier testing, the presence of the SMN1 c.3+80T>G and/or c.*211_212del gene duplication variants are assessed. This test cannot definitively differentiate between individuals with two copies of SMN1 on one chromosome and zero copies on the other chromosome (silent carrier) from individuals having one copy on each chromosome (non-carrier). The presence of a SMN1 c.*3+80T>G and/or c.*211_212del gene duplication variant is associated with an increased risk of being a silent carrier, but the absence of the gene duplication variant does not preclude the possibility of being a silent carrier. For individuals undergoing carrier testing, a population specific post-test carrier risk estimates table is provided for those who carry two or more SMN1 exon 7 copies.

Synonyms

  • IGM Test, Spinal Muscular Atrophy, SMN1, SMN2, SMA Carrier, SMA Diagnostic, Spinal Muscular Atrophy Carrier, Spinal Muscular Atrophy Diagnostic, Spinal Muscular Atrophy Copy Number Analysis, SMN1 Copy Number, SMN2 Copy Number, Survival of Motor Neuron 1, Survival of Motor Neuron 2, SMN, SMA Dosage, Exon 7 Copy Number, spinal, muscular, atrophy, SMA

Methodology

Polymerase chain reaction (PCR)

CPT Codes

81329

Estimated Patient Price

< $1,000

DC Code

5321

Downtime Availability

4-Not available
Outpatient Requirements

Outpatient Submit with Specimen

Collect

Specimen Type Type of Container Volume of Specimen Status
Whole blood 4 mL Purple tube (EDTA) 4 mL - 8 mL Preferred
Whole blood Microtainer Purple tube (EDTA) 2 mL - 4 mL Alternate

Container Image

Outpatient Specimen Preparation

Whole blood: Do not centrifuge
                      Do not freeze
                      Transport to laboratory as soon as possible

Unacceptable Conditions

Wrong collection tube, Delayed or improper handling, Clotted specimen, Frozen specimen, Centrifuged specimen

Stability

Whole blood: Room temperature 24 hour(s)
Whole blood: Refrigerated 72 hour(s)

Remarks

If you are an external healthcare provider with no access to Nationwide Children’s Epic system, submission of a completed Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children’s Epic system, no requisition form is required; please place the lab order electronically in Epic. Specify in the lab order if this is for “Carrier” or “Diagnostic” testing. For questions, please call (614) 722-5321.

Clinical Information

This test detects the copy number of exon 7 of the SMN1 gene, and will report both homozygous and heterozygous deletions to identify carriers of Spinal Muscular Atrophy (SMA) as well as affected individuals. This test will also report SMN2 copy number. Diagnostic samples are performed as a STAT test, with expected result turnaround time of 7 days or less. If sending a diagnostic sample to arrive Friday or Saturday, please call the molecular genetics laboratory at 614-722-5321 to inform.

Autosomal recessive spinal muscular atrophy (SMA) is associated with having zero functional copies of SMN1. SMN1 exon 7 is absent in ~96% of patients with SMA, whereas most unaffected individuals have two or more functional SMN1 copies. Additionally, ~3–4% of patients with SMA are compound heterozygotes, with an SMN1 exon 7 deletion on one chromosome and a sequence variant in SMN1 on the other chromosome resulting in zero functional copies. Please note, this analysis does not detect other variants in SMN1 including sequence variants, rearrangements, or other deletions and duplications not involving exon 7.

SMN2 copy number has relevance in the setting of individuals with zero functional copies of SMN1 and can act as a disease modifier. Most patients with SMA type I have two or less copies of SMN2, three SMN2 copies are common in patients with SMA type II, and patients with SMA type III presentations often have 3 or 4 copies of SMN2SMN2 copy number analysis must be interpreted with caution as other modifiers of disease severity have been reported. 

When two copies of SMN1 exon 7 are detected for SMA carrier testing, the presence of the SMN1 c.3+80T>G and/or c.*211_212del gene duplication variants are assessed. This test cannot definitively differentiate between individuals with two copies of SMN1 on one chromosome and zero copies on the other chromosome (silent carrier) from individuals having one copy on each chromosome (non-carrier). The presence of a SMN1 c.*3+80T>G and/or c.*211_212del gene duplication variant is associated with an increased risk of being a silent carrier, but the absence of the gene duplication variant does not preclude the possibility of being a silent carrier. For individuals undergoing carrier testing, a population specific post-test carrier risk estimates table is provided for those who carry two or more SMN1 exon 7 copies.

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

10 days

Lab Area

Institute for Genomic Medicine

Methodology

Polymerase chain reaction (PCR)

CPT Codes

81329

Synonyms

  • IGM Test, Spinal Muscular Atrophy, SMN1, SMN2, SMA Carrier, SMA Diagnostic, Spinal Muscular Atrophy Carrier, Spinal Muscular Atrophy Diagnostic, Spinal Muscular Atrophy Copy Number Analysis, SMN1 Copy Number, SMN2 Copy Number, Survival of Motor Neuron 1, Survival of Motor Neuron 2, SMN, SMA Dosage, Exon 7 Copy Number, spinal, muscular, atrophy, SMA
Inpatient Requirements

Collect

Specimen Type Type of Container Volume of Specimen Status
Whole blood 4 mL Purple tube (EDTA) 4 mL - 8 mL Preferred
Whole blood Microtainer Purple tube (EDTA) 2 mL - 4 mL Alternate

Minimum Volume

Specimen Type Type of Container Minimum Volume
Whole blood 4 mL Purple tube (EDTA) 3 mL
Whole blood Microtainer Purple tube (EDTA) 1 mL

Container Image

Inpatient Specimen Preparation

Whole blood: Do not centrifuge
                      Do not freeze
                      Transport to laboratory as soon as possible

Unacceptable Conditions

Wrong collection tube, Delayed or improper handling, Clotted specimen, Frozen specimen, Centrifuged specimen

Stability

Whole blood: Room temperature 24 hour(s)
Whole blood: Refrigerated 72 hour(s)

Remarks

If you are an external healthcare provider with no access to Nationwide Children’s Epic system, submission of a completed Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children’s Epic system, no requisition form is required; please place the lab order electronically in Epic. Specify in the lab order if this is for “Carrier” or “Diagnostic” testing. For questions, please call (614) 722-5321.

Clinical Information

This test detects the copy number of exon 7 of the SMN1 gene, and will report both homozygous and heterozygous deletions to identify carriers of Spinal Muscular Atrophy (SMA) as well as affected individuals. This test will also report SMN2 copy number. Diagnostic samples are performed as a STAT test, with expected result turnaround time of 7 days or less. If sending a diagnostic sample to arrive Friday or Saturday, please call the molecular genetics laboratory at 614-722-5321 to inform.

Autosomal recessive spinal muscular atrophy (SMA) is associated with having zero functional copies of SMN1. SMN1 exon 7 is absent in ~96% of patients with SMA, whereas most unaffected individuals have two or more functional SMN1 copies. Additionally, ~3–4% of patients with SMA are compound heterozygotes, with an SMN1 exon 7 deletion on one chromosome and a sequence variant in SMN1 on the other chromosome resulting in zero functional copies. Please note, this analysis does not detect other variants in SMN1 including sequence variants, rearrangements, or other deletions and duplications not involving exon 7.

SMN2 copy number has relevance in the setting of individuals with zero functional copies of SMN1 and can act as a disease modifier. Most patients with SMA type I have two or less copies of SMN2, three SMN2 copies are common in patients with SMA type II, and patients with SMA type III presentations often have 3 or 4 copies of SMN2SMN2 copy number analysis must be interpreted with caution as other modifiers of disease severity have been reported. 

When two copies of SMN1 exon 7 are detected for SMA carrier testing, the presence of the SMN1 c.3+80T>G and/or c.*211_212del gene duplication variants are assessed. This test cannot definitively differentiate between individuals with two copies of SMN1 on one chromosome and zero copies on the other chromosome (silent carrier) from individuals having one copy on each chromosome (non-carrier). The presence of a SMN1 c.*3+80T>G and/or c.*211_212del gene duplication variant is associated with an increased risk of being a silent carrier, but the absence of the gene duplication variant does not preclude the possibility of being a silent carrier. For individuals undergoing carrier testing, a population specific post-test carrier risk estimates table is provided for those who carry two or more SMN1 exon 7 copies.

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

10 days

CPT Codes

81329

Lab Area

Institute for Genomic Medicine

Synonyms

  • IGM Test, Spinal Muscular Atrophy, SMN1, SMN2, SMA Carrier, SMA Diagnostic, Spinal Muscular Atrophy Carrier, Spinal Muscular Atrophy Diagnostic, Spinal Muscular Atrophy Copy Number Analysis, SMN1 Copy Number, SMN2 Copy Number, Survival of Motor Neuron 1, Survival of Motor Neuron 2, SMN, SMA Dosage, Exon 7 Copy Number, spinal, muscular, atrophy, SMA

Estimated Patient Price

< $1,000
Overview/Billing

Synonyms

  • IGM Test, Spinal Muscular Atrophy, SMN1, SMN2, SMA Carrier, SMA Diagnostic, Spinal Muscular Atrophy Carrier, Spinal Muscular Atrophy Diagnostic, Spinal Muscular Atrophy Copy Number Analysis, SMN1 Copy Number, SMN2 Copy Number, Survival of Motor Neuron 1, Survival of Motor Neuron 2, SMN, SMA Dosage, Exon 7 Copy Number, spinal, muscular, atrophy, SMA

CPT Codes

81329
Interpretation

Clinical Information

This test detects the copy number of exon 7 of the SMN1 gene, and will report both homozygous and heterozygous deletions to identify carriers of Spinal Muscular Atrophy (SMA) as well as affected individuals. This test will also report SMN2 copy number. Diagnostic samples are performed as a STAT test, with expected result turnaround time of 7 days or less. If sending a diagnostic sample to arrive Friday or Saturday, please call the molecular genetics laboratory at 614-722-5321 to inform.

Autosomal recessive spinal muscular atrophy (SMA) is associated with having zero functional copies of SMN1. SMN1 exon 7 is absent in ~96% of patients with SMA, whereas most unaffected individuals have two or more functional SMN1 copies. Additionally, ~3–4% of patients with SMA are compound heterozygotes, with an SMN1 exon 7 deletion on one chromosome and a sequence variant in SMN1 on the other chromosome resulting in zero functional copies. Please note, this analysis does not detect other variants in SMN1 including sequence variants, rearrangements, or other deletions and duplications not involving exon 7.

SMN2 copy number has relevance in the setting of individuals with zero functional copies of SMN1 and can act as a disease modifier. Most patients with SMA type I have two or less copies of SMN2, three SMN2 copies are common in patients with SMA type II, and patients with SMA type III presentations often have 3 or 4 copies of SMN2SMN2 copy number analysis must be interpreted with caution as other modifiers of disease severity have been reported. 

When two copies of SMN1 exon 7 are detected for SMA carrier testing, the presence of the SMN1 c.3+80T>G and/or c.*211_212del gene duplication variants are assessed. This test cannot definitively differentiate between individuals with two copies of SMN1 on one chromosome and zero copies on the other chromosome (silent carrier) from individuals having one copy on each chromosome (non-carrier). The presence of a SMN1 c.*3+80T>G and/or c.*211_212del gene duplication variant is associated with an increased risk of being a silent carrier, but the absence of the gene duplication variant does not preclude the possibility of being a silent carrier. For individuals undergoing carrier testing, a population specific post-test carrier risk estimates table is provided for those who carry two or more SMN1 exon 7 copies.

Methodology

Polymerase chain reaction (PCR)
NCH Lab Only

Outpatient Submit with Specimen

Collect

Specimen Type Type of Container Volume of Specimen Status
Whole blood 4 mL Purple tube (EDTA) 4 mL - 8 mL Preferred
Whole blood Microtainer Purple tube (EDTA) 2 mL - 4 mL Alternate

Minimum Volume

Specimen Type Type of Container Minimum Volume
Whole blood 4 mL Purple tube (EDTA) 3 mL
Whole blood Microtainer Purple tube (EDTA) 1 mL

Container Image

Inpatient Specimen Preparation

Whole blood: Do not centrifuge
                      Do not freeze
                      Transport to laboratory as soon as possible

Outpatient Specimen Preparation

Whole blood: Do not centrifuge
                      Do not freeze
                      Transport to laboratory as soon as possible

InLab Processing

Send to Molecular Genetics Lab with all submitted paperwork. CPA needs to order GENSP in Sunquest for Non-EPIC lab order. Frozen or centrifuged specimen may be accepted at Molecular Genetics Lab's discretion.

Stability

Whole blood: Room temperature 24 hour(s)
Whole blood: Refrigerated 72 hour(s)

Unacceptable Conditions

Wrong collection tube, Delayed or improper handling, Clotted specimen, Frozen specimen, Centrifuged specimen

Days Performed

Monday through Saturday

Set Up Schedule

All tests not performed daily.

Typical Turnaround

10 days

Remarks

If you are an external healthcare provider with no access to Nationwide Children’s Epic system, submission of a completed Genetic Test Requisition Form is required. If you are an internal ordering provider with access to Nationwide Children’s Epic system, no requisition form is required; please place the lab order electronically in Epic. Specify in the lab order if this is for “Carrier” or “Diagnostic” testing. For questions, please call (614) 722-5321.

Clinical Information

This test detects the copy number of exon 7 of the SMN1 gene, and will report both homozygous and heterozygous deletions to identify carriers of Spinal Muscular Atrophy (SMA) as well as affected individuals. This test will also report SMN2 copy number. Diagnostic samples are performed as a STAT test, with expected result turnaround time of 7 days or less. If sending a diagnostic sample to arrive Friday or Saturday, please call the molecular genetics laboratory at 614-722-5321 to inform.

Autosomal recessive spinal muscular atrophy (SMA) is associated with having zero functional copies of SMN1. SMN1 exon 7 is absent in ~96% of patients with SMA, whereas most unaffected individuals have two or more functional SMN1 copies. Additionally, ~3–4% of patients with SMA are compound heterozygotes, with an SMN1 exon 7 deletion on one chromosome and a sequence variant in SMN1 on the other chromosome resulting in zero functional copies. Please note, this analysis does not detect other variants in SMN1 including sequence variants, rearrangements, or other deletions and duplications not involving exon 7.

SMN2 copy number has relevance in the setting of individuals with zero functional copies of SMN1 and can act as a disease modifier. Most patients with SMA type I have two or less copies of SMN2, three SMN2 copies are common in patients with SMA type II, and patients with SMA type III presentations often have 3 or 4 copies of SMN2SMN2 copy number analysis must be interpreted with caution as other modifiers of disease severity have been reported. 

When two copies of SMN1 exon 7 are detected for SMA carrier testing, the presence of the SMN1 c.3+80T>G and/or c.*211_212del gene duplication variants are assessed. This test cannot definitively differentiate between individuals with two copies of SMN1 on one chromosome and zero copies on the other chromosome (silent carrier) from individuals having one copy on each chromosome (non-carrier). The presence of a SMN1 c.*3+80T>G and/or c.*211_212del gene duplication variant is associated with an increased risk of being a silent carrier, but the absence of the gene duplication variant does not preclude the possibility of being a silent carrier. For individuals undergoing carrier testing, a population specific post-test carrier risk estimates table is provided for those who carry two or more SMN1 exon 7 copies.

Synonyms

  • IGM Test, Spinal Muscular Atrophy, SMN1, SMN2, SMA Carrier, SMA Diagnostic, Spinal Muscular Atrophy Carrier, Spinal Muscular Atrophy Diagnostic, Spinal Muscular Atrophy Copy Number Analysis, SMN1 Copy Number, SMN2 Copy Number, Survival of Motor Neuron 1, Survival of Motor Neuron 2, SMN, SMA Dosage, Exon 7 Copy Number, spinal, muscular, atrophy, SMA

Methodology

Polymerase chain reaction (PCR)

CPT Codes

81329

Estimated Patient Price

< $1,000

DC Code

5321

Downtime Availability

4-Not available

Lab Area

Lab Area
Institute for Genomic Medicine